These easy Greek Yogurt Chocolate Chip muffins are soft, perfectly sweet, and packed with chocolate chips. They’re also easy to make and use common ingredients that you probably already have on hand.
I like to make these for my daughters lunch boxes or for a quick, filling snack after school. For breakfast, we pair the muffins with fruit and either a piece of sausage, a small cup of Greek yogurt or some cheese, for a high-protein meal that makes a nutritious start to the day.
Why You’ll Love These Greek Yogurt Chocolate Chip Muffins
Moist and Fluffy Texture: Perfectly soft – never dry.
Easy and Quick to Make: This muffin recipe is super easy to follow, uses simple ingredients and come together quickly.
Versatile and Family-Friendly: Whether for breakfast, snack time, or dessert, these muffins are a versatile treat that both adults and kids love. Chocolate lovers might also enjoy my Greek Yogurt Double Chocolate Muffins, which are rich, soft, and made with the same Greek yogurt base for extra moisture and protein.

Ingredients for Chocolate Chip Muffins
These healthy Greek yogurt muffins come together with simple ingredients. Here’s what you need:
- Flour
- Sugar
- Baking soda
- Salt
- Butter – If you prefer to use less butter, you could also substitute avocado or olive oil for half the butter. Using all butter gives it an extra layer of richness, but they still taste amazing when you use half oil and half butter.
- Plain Greek yogurt
- Milk – 2% or whole
- Egg
- Vanilla extract
- Chocolate chips
How to Make Greek Yogurt Chocolate Chip Muffins
Preheat the oven to 375℉ and prepare your muffin tin by adding muffin liners or spraying with cooking spray.
In a large bowl, add the flour, sugar, baking soda and salt. Whisk until mixed well. Set bowl aside.
In a medium sized bowl, add the butter. Microwave for 20 seconds. Gently stir and microwave for another 15-20 seconds. You want the butter super soft and mostly melted.
Next, add the Greek yogurt, milk, egg and vanilla extract to the bowl with melted butter. Whisk until well combined.
Pour the bowl of wet ingredients into the large bowl of dry ingredients. Using a spatula or large spoon, stir until just combined. Add the chocolate chips and gently fold into the batter.

Fill each muffin cup almost full. Top with a few additional chocolate chips, if desired.
Bake at 375℉ for 15-17 minutes. Muffins are done when a toothpick inserted into the center comes out clean. (Mine are done right at 15 minutes, but each oven can be slightly different.)
Let the muffins cool in the tray for 5-10 minutes before removing them. Enjoy immediately or let them fully cool and store in an airtight container for up to 5 days.
Video Instructions
Tips & Notes for the Best Greek Yogurt Muffins
Measure Flour Correctly: For the best results, spoon the flour into your measuring cup and level it off with a knife. Avoid packing the flour, as this can result in dry, dense muffins.
Don’t Overmix the Batter: When combining the wet and dry ingredients, mix just until everything is incorporated. Overmixing can make the muffins dense and tough, so it’s important to keep it light.
Don’t Overbake – Start checking the muffins at 15 minutes using the toothpick test.
How to Store
These muffins can be stored in an airtight container at room temperature for 3-4 days. They will last a couple more days if placed in the refrigerator. When removed from the fridge, warm them up for 10-15 seconds in the microwave to bring back that extra softness.
For longer storage, wrap properly and keep in the freezer for up to 3 months. Thaw at room temperature or microwave in 15 second increments.
More Greek Yogurt Muffins to Try
I love to make muffins with Greek yogurt because it adds moisture while also adding a boost of natural protein. If you love baking with Greek yogurt too, here are a few more muffin recipes to try:
Easy Greek Yogurt Chocolate Chip Muffins
Ingredients
- 2 cups all purpose flour
- ¾ cup sugar
- 1 tsp baking soda
- ½ tsp salt
- ½ cup butter (or ¼ cup butter and ¼ olive or avocado oil – see recipe notes)**
- 1 cup plain Greek yogurt
- ½ cup milk 2% or whole
- 1 egg
- 1 tsp vanilla extract
- ¾ cup chocolate chips
Instructions
- Preheat the oven to 375℉ and prepare your muffin tins by adding muffin liners or spraying with cooking spray.
- In a large bowl, add the flour, sugar, baking soda and salt. Whisk until mixed well. Set bowl aside.
- In a medium sized bowl, add the butter. Microwave for 20 seconds. Stir and microwave another 15-20 seconds. You want the butter soft and mostly melted.
- Add the Greek yogurt, milk, egg and vanilla extract to the bowl with melted butter. Whisk until well combined.
- Pour the bowl of wet ingredients into the large bowl of dry ingredients. Using a spatula or large spoon, stir until just combined. Add the chocolate chips and gently fold into the batter.
- Fill each muffin cup almost full. Top with a few additional chocolate chips, if desired.
- Bake at 375℉ for 15-17 minutes. Muffins are done when a toothpick inserted into the center comes out clean. (Mine are done right at 15 minutes but each oven can be slightly different.)
- Let them cool for 5-10 minutes in the tray before removing. Enjoy or let them fully cool before storing.
- If you make these and have a quick second to scroll down to the bottom of the page and click the stars to rate it, I would greatly appreciate it! It helps my little website so much, so thank you. :)
Notes
Nutrition




I subbed half a cup of oatmeal for half a cup of the flour to add some fiber. Baked in mini muffin tin for an easy grab and go breakfast. The kiddos gave them 2 thumbs up! Thanks for a quick and easy recipe!
I’m so glad everyone liked them! I love the swap you made too. Thank you for taking the time to share that! Enjoy the recipe. :)
Now I only print recipes that will be made on repeat…this one has been printed and added to my recipe book! They have become a weekly staple in our family and my boys gobble them up. Thanks for the added protein 💪
These are absolutely amazing. I use your recipe as a base for my fresh milled flour muffins and it’s perfect! So tender. Thank you!
Best muffin recipe I’ve ever tried! I change the flavors (choc. chip, blueberry walnut, etc) and it still comes out perfect every time. I even sub in almond milk and add a scoop or two of protein powder and they still comes out delicious! I make them every two weeks and eat them as a snack at work.
These have become a snack staple in our home! My kids and husband LOVE them! Sometimes I swap honey for the sugar (not equal amounts, I have a conversion chart) and they turn out the same with the honey. Thank you for the recipe!
I’m so glad everyone is enjoying the recipe! Thank you so much for taking the time to rate it. I really appreciate it!